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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21377268_21377369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21377268 - 21377369
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGCCGCCTGACG
Flanking Amino Acid:
MKTLLKWLLGLL
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
43.7
-0.6
2.1
49.82
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673