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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21384388_21386548_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21384388 - 21386548
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
CTTCCCTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTCATAATT
Flanking Amino Acid:
AWLVNGRGRRDFPEKTLVAE
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
72.7
37.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.1
0.54
1
74.2
28.3
Minor 5ss
39.3
-1.2
3.1
49.6
40.5
Minor BPS
69.5
0.69
1.6
85.41
34.6

Associated Gene:

Gene:
GCG
Ensembl Gene ID:
ENSAPLG00000010295
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010752
21383172 - 21389905
6734