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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21389488_21389807_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21389488 - 21389807
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTCTATTAACA
Flanking Amino Acid:
NPLQDTEEKSRSFKASQSEP
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.7
0.51
0.9
69.7
40.4
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
64.9
0.46
1.6
74.91
35.7

Associated Gene:

Gene:
GCG
Ensembl Gene ID:
ENSAPLG00000010295
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010752
21383172 - 21389905
6734