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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21406404_21410473_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21406404 - 21410473
Intron Length:
4070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
TTTAATATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATA
Flanking Amino Acid:
VAPVSSWEYYASIYTERFMG
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
67.9
38.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.1
0.59
0.9
69.6
40
Minor 5ss
38.1
-1.3
3.1
48.4
47.6
Minor BPS
81.7
0.99
1
82.68
32.7

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512