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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21410574_21412688_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21410574 - 21412688
Intron Length:
2115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTAAACA
Flanking Amino Acid:
DEKRIAIWGWSYGGYVTSLA
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74
0.54
0.9
66.2
40.4
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
60.1
0.31
1.6
68.62
37.8

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512