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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21414953_21416067_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21414953 - 21416067
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCCACCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATGTGTAAATT
Flanking Amino Acid:
RSKKYPLLIQVYGGPCSQNV
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
67
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.5
0.62
0.8
74.5
29.4
Minor 5ss
44.1
-0.6
2.5
54.6
42.8
Minor BPS
44
-0.3
2.3
62.27
42.6

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512