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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21416984_21418000_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21416984 - 21418000
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATAATT
Flanking Amino Acid:
STLFENQGDRELRILEDNWE
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.9
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.8
0.85
0.6
84.9
22.8
Minor 5ss
30.6
-2.2
3.3
39.7
45.9
Minor BPS
57
0.3
1.8
79.19
36.5

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512