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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21418049_21419313_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21418049 - 21419313
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCTTTTCATT
Flanking Amino Acid:
RSKYYALICYGPGIPISTLF
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
73.7
0.53
1
69.8
39.8
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
52.9
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512