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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21431141_21432306_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21431141 - 21432306
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCCATTTCAACT
Flanking Amino Acid:
ASYHIYDLIYGGFVTENQLP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.2
0.86
0.6
88.1
21.7
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
49
0.01
1.6
60.77
43.2

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512