About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21432360_21432561_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21432360 - 21432561
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGTTTAATAATA
Flanking Amino Acid:
FMALESNYSKLWRYSYTASY
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
49.6
-0
1.8
64.6
35.1

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512