About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21432637_21432779_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21432637 - 21432779
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTAATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TACTTCTTAATC
Flanking Amino Acid:
LTTIMTNSTMKQVNASNYVL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81
0.7
0.9
77.3
36.5
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
75.1
0.77
1.1
74.79
36.1

Associated Gene:

Gene:
FAP
Ensembl Gene ID:
ENSAPLG00000010418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010924
21402925 - 21440436
37512