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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21445885_21447395_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21445885 - 21447395
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTATTCTGACTC
Flanking Amino Acid:
MHHVSVKKDFQHLYHTRENK
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
49.5
-0
1.7
60.43
38.8

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097