Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21447587_21448063_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21447587 - 21448063

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTACT

5'SS Class:

major

3'SS Sequence:

GTTATGTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

AGTGCTCTAATT

Flanking Amino Acid:

RMPQEEYLHKIESFQLQSIM

Intron Amino Acid Position:

849

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

77.1

37.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

74.7

0.56

65.9

45.2

Minor 5ss

50.1

0.01

2.2

40.2

Minor BPS

54.1

0.21

1.8

71.57

39.8

Associated Gene:

Gene:

IFIH1

Ensembl Gene ID:

ENSAPLG00000010913

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011398

21445510 - 21471606

26097