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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21448226_21449122_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21448226 - 21449122
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCAAATCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTTTGCAAAT
Flanking Amino Acid:
LVTNEIAMLQARGRARADES
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
62.4
0.28
1
56
38.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
45.6
-0.2
2.2
68.37
43

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097