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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21453716_21455102_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21453716 - 21455102
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
GATTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCTTACAG
Flanking Amino Acid:
NQKAEEHILKICANLDARRI
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
72.3
37.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.8
76.8
37.1
Minor 5ss
37.1
-1.5
2.8
45.5
36.7
Minor BPS
58.7
0.13
1.8
66.56
41.1

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097