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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21458075_21459068_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21458075 - 21459068
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATTTGGAAACT
Flanking Amino Acid:
PGKVIVLVNKVPLVEQHLRK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
83.5
0.75
0.8
81
35.7
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
43.7
-0.4
2.7
72.02
45.1

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097