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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21459290_21462674_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21459290 - 21462674
Intron Length:
3385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATATTT
Flanking Amino Acid:
LGQSSTTSNSDEDEMESRAS
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.3
0.46
0.8
67.5
34.1
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
48.1
-0
1.8
67.41
37.8

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097