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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21462756_21466636_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21462756 - 21466636
Intron Length:
3881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTCCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTTCATT
Flanking Amino Acid:
TSVEKNSVVLESDVATEDRS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
62.7
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
86.3
26.9
Minor 5ss
33
-1.9
3
33.6
41.5
Minor BPS
61.6
0.45
1.7
79.54
37.3

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097