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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21466814_21468498_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21466814 - 21468498
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTGTTACTT
Flanking Amino Acid:
LADDLSGNTGGKENKGNGVK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78.1
36.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
0.8
73.2
37
Minor 5ss
44
-0.7
2.9
60.8
43.8
Minor BPS
49.7
0.05
2.3
74.4
43.5

Associated Gene:

Gene:
IFIH1
Ensembl Gene ID:
ENSAPLG00000010913
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011398
21445510 - 21471606
26097