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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21482040_21483357_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21482040 - 21483357
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GCCATCTTATTT
Flanking Amino Acid:
TDRSFSPSSQCPEFLDLEKS
Intron Amino Acid Position:
1109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
90.9
0.92
0.6
84.1
30.9
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
49.2
0.02
1.6
60.36
43.8

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748