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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21487005_21491700_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21487005 - 21491700
Intron Length:
4696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGGATT
Flanking Amino Acid:
LIDKRSNSCKDIADKRNWEE
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.8
0.72
0.9
82.4
34
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
56.2
0.28
1.8
80.46
35.1

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748