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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21507529_21511073_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21507529 - 21511073
Intron Length:
3545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCATCTATATCT
Flanking Amino Acid:
LKSDIVVAILGKNDIFGEMV
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
53.4
0.19
1.9
73.5
43.4

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748