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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21522192_21522882_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21522192 - 21522882
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CTATTTAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATC
Flanking Amino Acid:
IFSICVMLIGSLMYASIFGN
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
1
67
42.7
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
68.7
0.57
1.4
74.77
36.3

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748