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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21523283_21531162_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21523283 - 21531162
Intron Length:
7880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
LLIFGSGSEETTTLIGLLKT
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
95
1.01
0.5
90.9
21.2
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748