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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21552138_21555861_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21552138 - 21555861
Intron Length:
3724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGAAAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
NIFRDRHASEDNGRNVKGPF
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.3
39.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
54.5
0.1
1.1
45.7
44.1
Minor 5ss
42.2
-0.9
3.1
54.5
49.7
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
KCNH7
Ensembl Gene ID:
ENSAPLG00000010994
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011447
21481773 - 21699520
217748