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Intron Name: Anas_platyrhynchos_platyrhynchos_7_217990_219227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

217990 - 219227

Intron Length:

1238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTTGG

5'SS Class:

major

3'SS Sequence:

TTTTCTGTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

TTTTCTGTTACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

65.8

42.7

Major BPS

0.57

1.2

77.7

37.1

Major PPT

88.8

0.87

0.8

83.7

31.3

Minor 5ss

32.8

-2

3.1

40.1

Minor BPS

57.4

0.23

2.3

78.96

37.6

Associated Gene:

Gene:

CLK1

Ensembl Gene ID:

ENSAPLG00000016010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016728

217151 - 226484

9334