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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21937465_21948647_R

Intron Information:

Intron Rank:
151170
Intron Class:
major
Intron Phase:
Intron Coordinates:
21937465 - 21948647
Intron Length:
11183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGACCTCTCACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.9
0.49
0.9
68.3
31.9
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
42
-0.7
2
44.23
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028850
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025913
21937289 - 21950529
13241