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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21965675_21966131_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21965675 - 21966131
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCTAG
5'SS Class:
weak_major
3'SS Sequence:
CCTGCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTGCTGTTAACT
Flanking Amino Acid:
LTRCSVPNKRGLKMQWTPEH
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
58.5
43.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
62.5
0.28
0.9
53.7
36.6
Minor 5ss
66.9
0.57
2
72.7
44.5
Minor BPS
60.7
0.41
2.1
80.77
41.2

Associated Gene:

Gene:
FIGN
Ensembl Gene ID:
ENSAPLG00000011210
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047244
21963423 - 22058318
94896