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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21965675_22057265_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21965675 - 22057265
Intron Length:
91591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCG
5'SS Class:
major
3'SS Sequence:
CCTGCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTGCTGTTAACT
Flanking Amino Acid:
MISSTSVYGLKMQWTPEH
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
60.7
43.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
62.5
0.28
0.9
53.7
36.6
Minor 5ss
40.8
-1
2.7
47.7
42.1
Minor BPS
60.7
0.41
2.1
80.77
41.2

Associated Gene:

Gene:
FIGN
Ensembl Gene ID:
ENSAPLG00000011210
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011659
21963423 - 22058434
95012