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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21966388_22057265_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21966388 - 22057265
Intron Length:
90878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTTTTTTTTCCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
60.7
43.7
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
40.8
-1
2.7
47.7
42.1
Minor BPS
44.4
-0.4
3.6
74.12
37.8

Associated Gene:

Gene:
FIGN
Ensembl Gene ID:
ENSAPLG00000011210
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047244
21963423 - 22058318
94896