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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_220975_221413_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
220975 - 221413
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
CGTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GCTTCTGTGATT
Flanking Amino Acid:
CQSGDVLSARYEIVATLGEG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
66.7
38.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
82.7
0.74
0.7
81.1
31
Minor 5ss
41.8
-0.9
3.3
60.6
44.6
Minor BPS
51.4
0.13
2
70.84
41.1

Associated Gene:

Gene:
CLK1
Ensembl Gene ID:
ENSAPLG00000016010
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016728
217151 - 226484
9334