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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22156869_22158095_F

Intron Information:

Intron Rank:
133618
Intron Class:
major
Intron Phase:
Intron Coordinates:
22156869 - 22158095
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
ATGTGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTACTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.7
0.51
0.9
66.5
40
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
63.8
0.41
1.7
78.27
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021870
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035745
22156348 - 22158348
2001