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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22187876_22241174_R

Intron Information:

Intron Rank:
142843
Intron Class:
major
Intron Phase:
Intron Coordinates:
22187876 - 22241174
Intron Length:
53299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAACAC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TATTGCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
59.3
40
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
30.2
-2.3
3.4
41.2
45.5
Minor BPS
57.9
0.33
2
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024153
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046667
22145390 - 22241262
95873