About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22263653_22263814_R


Intron Information:

Intron Rank:
142498

Intron Class:
major

Intron Phase:

Intron Coordinates:
22263653 - 22263814

Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGGGGTGT

5'SS Class:
major

3'SS Sequence:
CTTAAATGTCCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTAAAT

U12 Branch Point Sequence:
TCCCCCTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76
0.61
1
66.5
41.6

Major BPS
70
0.5
1.1
76.9
32.8

Major PPT
68.1
0.41
1.1
58.4
46.1

Minor 5ss
31.6
-2.1
3.6
46.4
49

Minor BPS
69.9
0.7
1.4
78.73
43.1

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22263009 - 22265151
2143