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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_223143_223980_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
223143 - 223980
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTGCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAGTGTTGAAAT
Flanking Amino Acid:
HLNASDPSNTYRCVQMLEWF
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.7
0.71
0.8
76.6
32
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
46.4
-0.1
1.9
61.7
41.9

Associated Gene:

Gene:
CLK1
Ensembl Gene ID:
ENSAPLG00000016010
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016728
217151 - 226484
9334