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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22341119_22344253_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22341119 - 22344253
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTTTTTCCATT
Flanking Amino Acid:
LKIKHFQIVPLEDDGKLFYT
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.5
0.78
0.8
78.9
32.9
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
48.9
-0
1.9
71.95
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422