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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22348232_22348321_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22348232 - 22348321
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
TTTATTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAG
Flanking Amino Acid:
HGSPIAMSNMAIHRSQSWFH
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
67.3
44.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.4
0.89
0.7
84.4
30.5
Minor 5ss
34.8
-1.7
3.4
40.1
45.9
Minor BPS
66.7
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422