About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22348380_22348466_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22348380 - 22348466
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATAAGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAATCTTTACTT
Flanking Amino Acid:
VAVEEGLAWRRRGCLRLNSH
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
54.7
36.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77.3
0.61
0.8
72.7
31.1
Minor 5ss
35.7
-1.6
3.3
39
46.3
Minor BPS
65
0.55
1.6
77.68
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422