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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22348584_22350941_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22348584 - 22350941
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
AAAAACTCAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
64.2
40.1
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
88.1
0.86
0.8
83.9
31.1
Minor 5ss
41.7
-0.9
2.7
51.1
39.7
Minor BPS
48.9
-0.1
1.7
57.97
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422