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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22353198_22359192_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22353198 - 22359192
Intron Length:
5995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCTGATATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
74.1
0.6
1
69
38.9
Major PPT
87.1
0.84
0.8
85
35.1
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
42.8
-0.4
2
61
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422
Gene:
Ensembl Gene ID:
ENSAPLG00000028024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022993
22351839 - 22401852
50014