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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22359268_22361057_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22359268 - 22361057
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACAGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.9
0.63
0.9
71
39
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
61.5
0.44
1.9
87.61
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000998
22340804 - 22361225
20422
Gene:
Ensembl Gene ID:
ENSAPLG00000028024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041546
22359178 - 22384445
25268
ENSAPLT00000022993
22351839 - 22401852
50014