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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22426794_22428375_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22426794 - 22428375
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CCTCTCTTTACA
Flanking Amino Acid:
GGSQNNLMDKRSSNVNSEQK
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85
0.79
0.7
79
26.6
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
56.4
0.2
1.7
64.02
42.2

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000037673
22423531 - 22459739
36209
ENSAPLT00000036351
22423531 - 22459739
36209