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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22433569_22439554_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22433569 - 22439554
Intron Length:
5986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TCTGTGAGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAG
U12 Branch Point Sequence:
CTTTCTGTGAGT
Flanking Amino Acid:
EDQSESSNETGVRTTEYSLE
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.4
38.1
Major BPS
48
-0.1
1.6
46.5
47
Major PPT
64.3
0.32
1
58.7
41.8
Minor 5ss
50.1
0
2.8
70.5
42
Minor BPS
49
0
2.3
74.14
43.6

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036351
22423531 - 22459739
36209