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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22439032_22439554_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22439032 - 22439554
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TGACTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATTACTTGACT
Flanking Amino Acid:
EDQSESSNETVTESRESSPT
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.4
38.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
50.1
0
2.8
70.5
42
Minor BPS
76.5
0.91
1.4
89.64
34.1

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037673
22423531 - 22459739
36209
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000043736
22423531 - 22502881
79351