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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22439697_22448326_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22439697 - 22448326
Intron Length:
8630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGCTAATAATC
Flanking Amino Acid:
KSNSLDRNEQAPPGLVRKGS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
80
0.75
1
78.6
31
Major PPT
78
0.63
0.7
76.7
25.2
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
47.8
-0.1
1.8
61.64
37.6

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000037673
22423531 - 22459739
36209
ENSAPLT00000036351
22423531 - 22459739
36209