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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22448567_22448685_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22448567 - 22448685
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CATAAATCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTCCCATAAAT
Flanking Amino Acid:
FQRSKKKREQAASAPATPLM
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
50.9
0.02
1.1
46
40.1
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
68.2
0.65
1.7
88.5
35.3

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036351
22423531 - 22459739
36209
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000037673
22423531 - 22459739
36209