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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22448784_22449659_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22448784 - 22449659
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ACATCTAGAACT
Flanking Amino Acid:
PVNLNLPSLQDAYQMSENSE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.4
0.75
0.7
82.2
28.1
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
51.6
0.13
1.7
69.26
41.3

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000036351
22423531 - 22459739
36209