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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22449699_22451336_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22449699 - 22451336
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAC
U12 Branch Point Sequence:
CAGACTGAGACT
Flanking Amino Acid:
RELYAMDISRATSPVNLNLP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
64.2
0.35
1
60.7
37.6
Major PPT
81.7
0.71
0.8
77.5
31.2
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
39.6
-0.7
2.2
51.57
43.6

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000036351
22423531 - 22459739
36209