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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22451566_22452481_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22451566 - 22452481
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTGAAAT
Flanking Amino Acid:
KKKPVPVIPEQTVRVVINYK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.3
0.73
0.7
81.1
24.1
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
59
0.36
1.5
78.6
37.2

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000037673
22423531 - 22459739
36209
ENSAPLT00000036351
22423531 - 22459739
36209