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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22452684_22457036_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22452684 - 22457036
Intron Length:
4353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTTATTTAATT
Flanking Amino Acid:
DVIKYTTVNGRKPMMDLLIF
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.4
0.57
1
67.8
42.5
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
66.6
0.6
1.5
77.31
39.6

Associated Gene:

Gene:
COBLL1
Ensembl Gene ID:
ENSAPLG00000016090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022552
22423353 - 22502881
79529
ENSAPLT00000048427
22423353 - 22459739
36387
ENSAPLT00000016795
22423531 - 22457678
34148
ENSAPLT00000043736
22423531 - 22502881
79351
ENSAPLT00000037673
22423531 - 22459739
36209
ENSAPLT00000036351
22423531 - 22459739
36209